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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30586503_30588966_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30586503 - 30588966
Intron Length:
2464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTCTTTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCATTACCT
Flanking Amino Acid:
RSVLTNAHFSDKNFTGEDQA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.2
0.75
0.8
76.7
36.5
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
61.4
0.43
2
84.99
41.5

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589