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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30699119_30703232_R

Intron Information:

Intron Rank:
149504
Intron Class:
major
Intron Phase:
Intron Coordinates:
30699119 - 30703232
Intron Length:
4114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.7
34.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.5
0.89
0.7
84.1
29.7
Minor 5ss
41.3
-1
2.9
52.3
44.3
Minor BPS
63.8
0.43
1.8
77.1
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027940
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018001
30688352 - 30703864
15513