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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30711292_30711951_R

Intron Information:

Intron Rank:
133377
Intron Class:
major
Intron Phase:
Intron Coordinates:
30711292 - 30711951
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATTCTGGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.9
0.65
0.8
76.7
31.6
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
54
0.2
2.1
77.76
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018996
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026033
30711163 - 30712509
1347