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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30711983_30712377_R

Intron Information:

Intron Rank:
133378
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
30711983 - 30712377
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GAAACCTTTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
55.2
0.12
1.1
52.3
41.3
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018996
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026033
30711163 - 30712509
1347