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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30749177_30820877_R

Intron Information:

Intron Rank:
138303
Intron Class:
major
Intron Phase:
Intron Coordinates:
30749177 - 30820877
Intron Length:
71701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAAGCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
80
0.75
1
78.6
31
Major PPT
77.4
0.62
0.8
72.7
32.2
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
57.2
0.22
1.6
65.72
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021963
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036777
30745505 - 30821527
76023