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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30812558_30820877_R

Intron Information:

Intron Rank:
138301
Intron Class:
major
Intron Phase:
Intron Coordinates:
30812558 - 30820877
Intron Length:
8320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TATAAAATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
43.9
-0.6
2
53.19
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021963
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023114
30812268 - 30821527
9260