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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31055935_31057089_F

Intron Information:

Intron Rank:
143587
Intron Class:
major
Intron Phase:
Intron Coordinates:
31055935 - 31057089
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTCTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.5
0.62
0.9
71.2
39
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
63.4
0.4
1.8
70.96
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027381
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029598
31054447 - 31057143
2697