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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31072938_31076969_F

Intron Information:

Intron Rank:
124380
Intron Class:
major
Intron Phase:
Intron Coordinates:
31072938 - 31076969
Intron Length:
4032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.9
75.7
38
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
62.1
0.38
1.9
79.79
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017064
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034355
31059973 - 31082019
22047