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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31077346_31087813_R

Intron Information:

Intron Rank:
148825
Intron Class:
major
Intron Phase:
Intron Coordinates:
31077346 - 31087813
Intron Length:
10468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTGATGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TAAACATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
65
0.34
1
57.7
42.9
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
51.2
0.12
1.7
69.75
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027547
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046687
31075750 - 31089129
13380