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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31082080_31088970_F

Intron Information:

Intron Rank:
143790
Intron Class:
major
Intron Phase:
Intron Coordinates:
31082080 - 31088970
Intron Length:
6891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
AAATAGCGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
83.3
0.75
0.8
77.4
31.4
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
38.8
-0.8
2.3
50.27
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027480
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022963
31082040 - 31142946
60907