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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31294138_31301745_R

Intron Information:

Intron Rank:
132742
Intron Class:
major
Intron Phase:
Intron Coordinates:
31294138 - 31301745
Intron Length:
7608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGACATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
80
0.75
1
78.6
31
Major PPT
65.2
0.34
1.7
77.9
36.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
57.6
0.23
1.7
65.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018650
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028266
31293922 - 31302673
8752