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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31301839_31302541_R

Intron Information:

Intron Rank:
132743
Intron Class:
major
Intron Phase:
Intron Coordinates:
31301839 - 31302541
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAATCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.7
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.6
0.73
0.8
76.7
31.5
Minor 5ss
34
-1.8
3
43
44.6
Minor BPS
51.1
0.02
1.4
56.61
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018650
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028266
31293922 - 31302673
8752