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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31453220_31508511_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31453220 - 31508511
Intron Length:
55292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCATATCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAGTACTGAACT
Flanking Amino Acid:
LNKAEMEQSQPPSCQ*
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.7
0.67
0.9
73.2
36.2
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
64.4
0.53
1.7
79.66
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029370
31453106 - 31565712
112607