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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31501264_31508511_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31501264 - 31508511
Intron Length:
7248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
LNKAEMEQSQRVVKADIVNY
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.5
0.66
1
76.7
36.2
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047774
31500908 - 31565712
64805