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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31511575_31545914_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31511575 - 31545914
Intron Length:
34340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
QPLVALVGNKIDLEHMRTVK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.3
0.59
0.9
73.8
36.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029370
31453106 - 31565712
112607
ENSAPLT00000015710
31500908 - 31565712
64805
ENSAPLT00000046985
31502179 - 31565712
63534
ENSAPLT00000035532
31506074 - 31565712
59639
ENSAPLT00000029547
31508323 - 31565712
57390