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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31511575_31558113_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31511575 - 31558113
Intron Length:
46539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
DFFLKRIILPVDLEHMRTVK
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.3
0.59
0.9
73.8
36.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047774
31500908 - 31565712
64805