About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3153396_3154474_F

Intron Information:

Intron Rank:
148523
Intron Class:
major
Intron Phase:
Intron Coordinates:
3153396 - 3154474
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
AGCTTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
70.5
0.73
1.2
77.63
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029960
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023703
3152213 - 3208079
55867