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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31546045_31552732_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31546045 - 31552732
Intron Length:
6688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCATTTTAAAT
Flanking Amino Acid:
MLDKYIYGAQGILLVYDITN
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
53.6
0.19
1.4
64.59
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029370
31453106 - 31565712
112607
ENSAPLT00000015710
31500908 - 31565712
64805
ENSAPLT00000046985
31502179 - 31565712
63534
ENSAPLT00000035532
31506074 - 31565712
59639
ENSAPLT00000029547
31508323 - 31565712
57390