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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31552822_31558113_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31552822 - 31558113
Intron Length:
5292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
ATCTGTGTAACT
Flanking Amino Acid:
DFFLKRIILPGNLNVTLQVW
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
49
0.01
2.4
73.4
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021532
31511548 - 31565712
54165
ENSAPLT00000046985
31502179 - 31565712
63534
ENSAPLT00000015710
31500908 - 31565712
64805
ENSAPLT00000035532
31506074 - 31565712
59639
ENSAPLT00000029547
31508323 - 31565712
57390
ENSAPLT00000029370
31453106 - 31565712
112607