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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31558211_31559545_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31558211 - 31559545
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTAAAATGACA
Flanking Amino Acid:
MFSCRRRTSLATRFAQE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
46.3
-0.2
2.1
67.11
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029547
31508323 - 31565712
57390