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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31558211_31564842_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31558211 - 31564842
Intron Length:
6632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTAAAATGACA
Flanking Amino Acid:
VVLGDGTCGKTSLATRFAQE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
46.3
-0.2
2.1
67.11
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021532
31511548 - 31565712
54165
ENSAPLT00000047774
31500908 - 31565712
64805
ENSAPLT00000015710
31500908 - 31565712
64805
ENSAPLT00000046985
31502179 - 31565712
63534
ENSAPLT00000035532
31506074 - 31565712
59639
ENSAPLT00000029370
31453106 - 31565712
112607