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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31559635_31564842_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31559635 - 31564842
Intron Length:
5208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGTTACTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
75.6
0.58
0.9
68.7
36.3
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
63.4
0.5
1.8
81.75
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015052
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029547
31508323 - 31565712
57390