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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31597141_31597286_F

Intron Information:

Intron Rank:
146370
Intron Class:
major
Intron Phase:
Intron Coordinates:
31597141 - 31597286
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
72.5
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
42
-0.9
3.4
56.1
48.1
Minor BPS
48.3
-0
2.3
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019897
31595367 - 31598103
2737