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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31616784_31616898_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31616784 - 31616898
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGCCTTACTT
Flanking Amino Acid:
DLSNKKETTNEDEAGKADMA
Intron Amino Acid Position:
2834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.5
0.91
0.7
89.1
27.7
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
63.6
0.51
1.8
79.08
43.9

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018077
31612458 - 31646800
34343