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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31616934_31619824_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31616934 - 31619824
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAGCTCAGGATT
Flanking Amino Acid:
FASKGKSPQTGTDLSNKKET
Intron Amino Acid Position:
2822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
42.2
-0.5
1.6
52.82
35.6

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018077
31612458 - 31646800
34343