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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31621609_31621688_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31621609 - 31621688
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAGTTCTGAATT
Flanking Amino Acid:
KYPLEAAQPGGGESKADMSS
Intron Amino Acid Position:
2795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
62.1
0.46
1.4
72.13
38.9

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045054
31612458 - 31646800
34343
ENSAPLT00000018077
31612458 - 31646800
34343