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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31629136_31630274_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31629136 - 31630274
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
ELETNLKTEEPQQPESPRSE
Intron Amino Acid Position:
2622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.6
0.53
0.9
71.5
39.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045054
31612458 - 31646800
34343
ENSAPLT00000018077
31612458 - 31646800
34343