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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31630343_31631802_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31630343 - 31631802
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATAATTTTAACA
Flanking Amino Acid:
FQKSNTTFNSGNNAALPKLA
Intron Amino Acid Position:
2599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.6
0.49
0.9
71.5
39.3
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
67.3
0.54
1.2
70.99
34.6

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018077
31612458 - 31646800
34343
ENSAPLT00000045054
31612458 - 31646800
34343