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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31637927_31638833_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31637927 - 31638833
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
DSKEIQKTNETCEKNSSKEL
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045054
31612458 - 31646800
34343
ENSAPLT00000018077
31612458 - 31646800
34343