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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31640220_31640550_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31640220 - 31640550
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TGTGTATTATTT
Flanking Amino Acid:
SLKSGSQNAKGKSGLNVEEP
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
77.1
0.61
0.9
74.8
39.8
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
48.3
-0
1.9
69.12
42.2

Associated Gene:

Gene:
BOD1L1
Ensembl Gene ID:
ENSAPLG00000024618
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018077
31612458 - 31646800
34343
ENSAPLT00000045054
31612458 - 31646800
34343