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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_31911443_31911586_F

Intron Information:

Intron Rank:
136344
Intron Class:
major
Intron Phase:
Intron Coordinates:
31911443 - 31911586
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGACTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
TGATCTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
77.9
0.63
0.9
70.4
40.2
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
63.2
0.49
2
81.48
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023476
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048326
31870301 - 31911817
41517