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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32148829_32150996_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32148829 - 32150996
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAATA
Flanking Amino Acid:
QQRNSYNHHQPLLKQSPWSN
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
57.5
0.23
1.9
75.53
36.2

Associated Gene:

Gene:
CPEB2
Ensembl Gene ID:
ENSAPLG00000005039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005224
32147380 - 32197604
50225