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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32151276_32162130_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32151276 - 32162130
Intron Length:
10855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TGTTCCAATACT
Flanking Amino Acid:
NNSNTLLPLQDRNRMYDSLN
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
49.8
0.06
2.3
78.27
43.4

Associated Gene:

Gene:
CPEB2
Ensembl Gene ID:
ENSAPLG00000005039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005224
32147380 - 32197604
50225