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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32178250_32181939_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32178250 - 32181939
Intron Length:
3690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTGTTTTAATA
Flanking Amino Acid:
LNARSYGRRRGRSSLFPIDD
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
74.2
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
34.6
-1.8
2.9
44.3
43.4
Minor BPS
67.2
0.54
1.3
72.5
34

Associated Gene:

Gene:
CPEB2
Ensembl Gene ID:
ENSAPLG00000005039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005224
32147380 - 32197604
50225