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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32191197_32193005_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32191197 - 32193005
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TGTTTCCTAATA
Flanking Amino Acid:
VGGVPRPLRAVELAMIMDRL
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
70.7
41
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
74.6
0.55
0.9
70.8
34.8
Minor 5ss
33
-1.9
3
38.5
41
Minor BPS
66
0.5
1.6
76.52
34.3

Associated Gene:

Gene:
CPEB2
Ensembl Gene ID:
ENSAPLG00000005039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005224
32147380 - 32197604
50225