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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32193188_32197130_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32193188 - 32197130
Intron Length:
3943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTACTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TAGCTATTAACT
Flanking Amino Acid:
QLQHGDIDKRVEVKPYVLDD
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.4
0.57
0.9
70.7
34.8
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
61.5
0.44
1.6
75.79
40.3

Associated Gene:

Gene:
CPEB2
Ensembl Gene ID:
ENSAPLG00000005039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005224
32147380 - 32197604
50225