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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32234032_32238590_F

Intron Information:

Intron Rank:
126263
Intron Class:
major
Intron Phase:
Intron Coordinates:
32234032 - 32238590
Intron Length:
4559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTCTCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
38.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.6
85.1
22.4
Minor 5ss
42.5
-0.8
3
50.6
46.1
Minor BPS
53.1
0.09
2
69.75
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018009
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021291
32233825 - 32239629
5805