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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32301516_32302069_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
32301516 - 32302069
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCACCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
CTGTCTTCCACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
72.8
0.51
0.8
66.2
28.6
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
49
-0
2
61.79
44.2

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040052
32300632 - 32359601
58970