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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32302400_32309925_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32302400 - 32309925
Intron Length:
7526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TACAATTTAACC
Flanking Amino Acid:
PPAASPRPPRSLPPAPSTSR
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
59
0.26
1.5
65.28
40

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835