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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32312503_32313315_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32312503 - 32313315
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATAAATG
Flanking Amino Acid:
SVKKMKQKSSVQNDFPSAEE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.5
0.78
0.7
80.1
32
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
49.5
-0.1
1.9
60.74
41.5

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025504
32301417 - 32360251
58835
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185