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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32313487_32313661_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32313487 - 32313661
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTTGAGCT
5'SS Class:
major
3'SS Sequence:
ATTTGAACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTGAACT
Flanking Amino Acid:
HEEEQEEDETDEDVRLVKDD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
57.6
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
68
0.41
1
60.3
40.1
Minor 5ss
36
-1.6
3.3
50.7
45.4
Minor BPS
61.5
0.44
1.5
76.87
39.8

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835