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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32315347_32316830_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32315347 - 32316830
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTGTGTTTATTT
Flanking Amino Acid:
VENRLLRQEQGKGWFGDDGK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
75.1
35.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.7
0.73
0.8
78.1
35.3
Minor 5ss
36.2
-1.6
2.9
44.9
36.9
Minor BPS
53.7
0.19
2
74.92
43

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025504
32301417 - 32360251
58835
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185