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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32324283_32324676_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
32324283 - 32324676
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
AATTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTATACAATT
Flanking Amino Acid:
TNTPMKLYLRKEEVDQRSDE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.7
0.42
1.1
68.3
41.6
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
48.3
-0
1.9
72.76
38.1

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835