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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32329744_32330772_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32329744 - 32330772
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCCCCCTGATA
Flanking Amino Acid:
VVLDHEGVGSDVSFSFEADG
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.6
0.42
0.9
65
30.8
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
56.4
0.19
1.7
68.71
37.6

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025504
32301417 - 32360251
58835
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185