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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32330921_32333389_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32330921 - 32333389
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTCTTTCTATT
Flanking Amino Acid:
PVSQQTTGIPSALKNIDAIA
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
70.6
36.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.4
0.62
0.8
74.9
35.5
Minor 5ss
37.4
-1.4
3
48.4
47.1
Minor BPS
46.6
-0.1
1.8
65.66
39

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835