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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32351870_32352329_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32351870 - 32352329
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTGGCTATATTT
Flanking Amino Acid:
AYPDSSQTTAELVARYVALI
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
44.7
-0.3
1.9
59.69
44.7

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038372
32301417 - 32359601
58185
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835
ENSAPLT00000005494
32309988 - 32359601
49614
ENSAPLT00000040052
32300632 - 32359601
58970