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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32353851_32356972_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32353851 - 32356972
Intron Length:
3122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTAAAATGAACT
Flanking Amino Acid:
WLIIGNAIPEIWFNIQEHDS
Intron Amino Acid Position:
1326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.5
0.8
0.8
79.8
32.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
49.3
0.03
1.9
73.74
41.7

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038372
32301417 - 32359601
58185