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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32355169_32356972_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32355169 - 32356972
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTAAAATGAACT
Flanking Amino Acid:
NVYCLISCDNIWFNIQEHDS
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.5
0.8
0.8
79.8
32.3
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
49.3
0.03
1.9
73.74
41.7

Associated Gene:

Gene:
CC2D2A
Ensembl Gene ID:
ENSAPLG00000005264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040052
32300632 - 32359601
58970
ENSAPLT00000033800
32301417 - 32359601
58185
ENSAPLT00000025504
32301417 - 32360251
58835
ENSAPLT00000005494
32309988 - 32359601
49614