Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32358468_32359412_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32358468 - 32359412

Intron Length:

945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAAGTTG

5'SS Class:

major

3'SS Sequence:

CTTCTTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTAATT

Flanking Amino Acid:

ELQKQLGDYRVSGFPIHMPF

Intron Amino Acid Position:

1405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

63.7

43.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.4

0.82

0.7

79.8

32.1

Minor 5ss

39.3

-1.2

3.4

46.6

48.8

Minor BPS

0.99

87.87

31.1

Associated Gene:

Gene:

CC2D2A

Ensembl Gene ID:

ENSAPLG00000005264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038372

32301417 - 32359601

58185

ENSAPLT00000033800

32301417 - 32359601

58185

ENSAPLT00000025504

32301417 - 32360251

58835

ENSAPLT00000005494

32309988 - 32359601

49614

ENSAPLT00000040052

32300632 - 32359601

58970