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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32367892_32370206_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32367892 - 32370206
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
CTTTGCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATAATT
Flanking Amino Acid:
EHFYYCDNINAYQGLFSGKH
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
72.7
39.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.6
0.49
0.9
63.6
38.2
Minor 5ss
43.2
-0.7
3.4
65.4
45.8
Minor BPS
65.8
0.58
1.5
80.37
35

Associated Gene:

Gene:
FBXL5
Ensembl Gene ID:
ENSAPLG00000005791
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025263
32367751 - 32393593
25843